RnoEX0075373 @ rn6
Exon Skipping
Gene
ENSRNOG00000011321 | Rftn1
Description
raftlin lipid raft linker 1 [Source:RGD Symbol;Acc:1563347]
Coordinates
chr9:12888109-12932152:+
Coord C1 exon
chr9:12888109-12888312
Coord A exon
chr9:12899446-12899561
Coord C2 exon
chr9:12932049-12932152
Length
116 bp
Sequences
Splice sites
3' ss Seq
TGTTGTTTTTCTTTCCACAGATT
3' ss Score
12.4
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AAATGGAGATCTTCGCCTTTTTCAACAGACCAAGGAGCCAGCAGAAATGTCTGCAATACTACCCCGTCACCATCCCCCTCCAGGTCTCCAAGAACGGCCAGACAGTGAGCAGTCTGGACGCCAGCTGGCTGGAGCACATGAGTGACCACTTCCGGAAAGGCGGTGTGCTGGTGAACGCCGTCTTCCAGCTTGGCATGGCCAACG
Seq A exon
ATTCCTTCTATGGCCTGACAGATGGAGTATTCATCTTTGAAGCTGTTTCCACAGAAGATAGCAAAACCACACAGGGCTATGACGCCATTGTTGTGGAACAATGGACAGTCCTGGAA
Seq C2 exon
GGTACAGAGGTGCAGACCGACTACATGCCCCTGCTGAACTCGCTGGCAGCCTATGGGTGGCAGCTCACCTGTGTGCTGCCAACACCCATACTCAAGACTAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011321_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(14.0=100)
A:
PF152501=Raftlin=FE(7.8=100)
C2:
PF152501=Raftlin=FE(7.0=100)
Main Skipping Isoform:
ENSRNOT00000015210fB12375
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAATACTACCCCGTCACCA
R:
TTGAGTATGGGTGTTGGCAGC
Band lengths:
248-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]