GgaEX1049021 @ galGal3
Exon Skipping
Gene
ENSGALG00000011241 | RFTN1
Description
NA
Coordinates
chr2:34282149-34301910:-
Coord C1 exon
chr2:34301707-34301910
Coord A exon
chr2:34292818-34292933
Coord C2 exon
chr2:34282149-34282252
Length
116 bp
Sequences
Splice sites
3' ss Seq
ATAACACTGTGTTTCCACAGATT
3' ss Score
10.33
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
AGACCGAGATCTTCACTCTCTTCAACAAGCCCAAAACCCCACAAAGATGCAGCCAGTATTATACAGTGACTATCCCTATGAGGATCTCCAGGAATGGGCAGACTGTCAACAGCTTAGAAGCAAATTGGCTGGAGCATATGACAGATCACTTCAGGAAAGGAGGCTCATTGGTGAACGCCATCTTCAGCCTTGGAATGGTAAATG
Seq A exon
ATTCCTTGCATGGAACAATGGATGGAGTATTTCTCTTTGAAGACGTTGCTGTGGAAGACAATAAAACCACGCAGGGCTATGATGCTATTGTCGTAGAGCAGTGGACTGTACTGAAG
Seq C2 exon
GGGGTGGAAGTGCAGACAGACTATGTTCCACTGCTGAATTCCCTTGCCATATACGGCTGGCAGCTGACATGCGTCCTTCCTACTCCAATTGTGAAGACAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011241-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(13.7=100)
A:
PF152501=Raftlin=FE(7.7=100)
C2:
PF152501=Raftlin=FE(6.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCAACAAGCCCAAAACCCCA
R:
GTCAGCTGCCAGCCGTATATG
Band lengths:
252-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]