DreEX6072827 @ danRer10
Exon Skipping
Gene
ENSDARG00000070831 | rftn1a
Description
raftlin, lipid raft linker 1a [Source:ZFIN;Acc:ZDB-GENE-060503-293]
Coordinates
chr19:20721174-20724933:-
Coord C1 exon
chr19:20724730-20724933
Coord A exon
chr19:20724441-20724550
Coord C2 exon
chr19:20721174-20721277
Length
110 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTATTTATTTTCAGCAT
3' ss Score
9.63
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTGTGCAGGTGTTTGCACTGTACAACCATACCATAGTTCTGTCAGGATCGCCAAAGTTCTTCTCTCTGAGGGTTCCGCTGCAGGTGCACAGGGAGGCAGGACTTGTCAGCTCACTGGACTCTCTTTGGCTGGATCACATGACACAGCACTTCAGAAATGGTGCTCAACTCATCGATGGCTACTTTCACTTGGGAGATGATGCAG
Seq A exon
CATCTTCTTCCACTGTGGATAGTGTTTTTATTTTCCAGAGTGCTTCAGATGGTGTTGGGCCGACCACTGTGTATGATGCCATTGTAGTGGAGCAATGGACTGTGATTGAT
Seq C2 exon
GGTGTTGCAGTAAAGACAGACTACATCCCTCTGCTTCAGTCTCTGGCTCCATACGGCTGGAGACTGATGTGTGTGTTGCCCACTCCTATCGTCAAAGTGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070831-'5-8,'5-7,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF152501=Raftlin=FE(23.1=100)
A:
PF152501=Raftlin=FE(12.2=100)
C2:
PF152501=Raftlin=FE(11.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCTCTCTGAGGGTTCCGC
R:
TTGACGATAGGAGTGGGCAAC
Band lengths:
242-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]