DreEX6043759 @ danRer10
Exon Skipping
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4602688-4604875:+
Coord C1 exon
chr20:4602688-4602796
Coord A exon
chr20:4602900-4603079
Coord C2 exon
chr20:4604757-4604875
Length
180 bp
Sequences
Splice sites
3' ss Seq
ATTTCATTCTCTCATTGCAGCTA
3' ss Score
10.2
5' ss Seq
CAGGTGACC
5' ss Score
6.54
Exon sequences
Seq C1 exon
AAACTTCTCTTCTCCTTGGGCGGATCCTTCTTATACTATGCAGATCACTTCAAACTTTACAGCGGCTTCTGCGCCAATCACATTAAGGTGCAGAAAGTTCTGGAAAGAG
Seq A exon
CTAAAACAGACCGTGCATTCAAGGAGTTCCTGGAAGCGAGGAATCCCACAAAACAGCACTCGTCCACGCTGGAGTCGTACCTCATTAAACCTGTGCAGAGAGTCCTGAAGTATCCACTGCTGCTGAGGGAACTGGTGTCTCTCACTGACCCAGAGAGCGACCAGCACAACCACCTCACAG
Seq C2 exon
AAGCATTAAAGGCGATGGAGAAAGTGGCCAGTCACATCAACGAGATGCAGAAGATCTACGAGGACTACGGCACAGTGTTTGACCAGCTCGTGGCAGAGCAGAGCGGCCCGGAGAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233-'25-26,'25-25,26-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.066 C2=0.025
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(18.9=100)
A:
PF0062115=RhoGEF=FE(31.6=100)
C2:
PF0062115=RhoGEF=PD(7.4=35.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTTCTCCTTGGGCGGAT
R:
CTTCTCCGGGCCGCTCTG
Band lengths:
221-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]