DreEX6046447 @ danRer10
Exon Skipping
Gene
ENSDARG00000016464 | si:ch211-89p3.3
Description
si:ch211-89p3.3 [Source:ZFIN;Acc:ZDB-GENE-041014-372]
Coordinates
chr20:35283726-35286181:+
Coord C1 exon
chr20:35283726-35283807
Coord A exon
chr20:35285820-35286039
Coord C2 exon
chr20:35286119-35286181
Length
220 bp
Sequences
Splice sites
3' ss Seq
TTATATGCATTGTTCTTTAGGTA
3' ss Score
9.53
5' ss Seq
TAGGTACTG
5' ss Score
5.9
Exon sequences
Seq C1 exon
GGATGAAGAGTTTTCCGCCAGTTCGGTTCTGGAGTCTGATGTCATCCATGCTAATAGGAAGGATATACCCTGTATTTTTAGG
Seq A exon
GTAACAGCATCTCAGCTGTCCGCCTCCTCCAGTCAGAAGACGTGTATTCTAATTCTGGCTGACAACGAGCAAGAAAGGACGAAGTGGGTGTGCGCTCTGAATGAACTGCATCGCATCCTGAGGAAAAACAAGCTGAAGGAGCGTTTCGTCTATGTGCCTAAAGAAGCCTACGACAGCACACTTCCTCTCATCAAAACCACCCAAACTGCTGCTATTATAG
Seq C2 exon
ATCATGAACGCGTTGCTTTGGGCAATGAGGAGGGCCTGTTTGTCATCCACGTCACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016464-'32-34,'32-33,33-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0016924=PH=FE(22.5=100)
A:
PF0016924=PH=PD(30.8=50.0),PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(8.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAAGAGTTTTCCGCCAGT
R:
TTGGTGACGTGGATGACAAACA
Band lengths:
140-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]