RnoEX0018981 @ rn6
Exon Skipping
Gene
ENSRNOG00000002841 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:RGD Symbol;Acc:621406]
Coordinates
chr13:98424148-98426773:+
Coord C1 exon
chr13:98424148-98424229
Coord A exon
chr13:98425941-98426157
Coord C2 exon
chr13:98426711-98426773
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGACTGTTAAATTGTTGTAGGTC
3' ss Score
7.71
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AGATGAAGAATTTTCCGTGAGTTCAGTCTTGGCTTCTGATGTTATTCATGCAAGTCGAAAAGATATTCCCTGTATATTTAGA
Seq A exon
GTCACAGCCTCCCAGCTCTCAGCACCTAGTGACAAATGTTCCATCCTGATGCTAGCCGACAGCGAGACTGAGAGGAGTAAGTGGGTGGGAGTGCTGAGTGAACTCCACAAGGTTCTGAAGAAAAACAAGTTCAGAGACCGCTCAGTGTATGTCCCCAAAGAGGCTTACGACAGCACTCTACCCCTCATTAAAACAACGCAGGCCGCGGCAATCATAG
Seq C2 exon
ATCATGAGCGGGTAGCTTTGGGAAATGAAGAAGGATTATTTGTTGTGCATGTCACTAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002841_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATTTTCCGTGAGTTCAGTCT
R:
GTGACATGCACAACAAATAATCCT
Band lengths:
134-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]