DreEX6052900 @ danRer10
Exon Skipping
Gene
ENSDARG00000104283 | cdc42bpaa
Description
CDC42 binding protein kinase alpha (DMPK-like) a [Source:ZFIN;Acc:ZDB-GENE-120727-12]
Coordinates
chr17:8298795-8303729:+
Coord C1 exon
chr17:8298795-8298876
Coord A exon
chr17:8301361-8301580
Coord C2 exon
chr17:8303667-8303729
Length
220 bp
Sequences
Splice sites
3' ss Seq
CTGCTTTTGTTCTCCTGCAGGTG
3' ss Score
13.24
5' ss Seq
TAGGTAGAG
5' ss Score
3.22
Exon sequences
Seq C1 exon
GGATGAGGAATTTTCTGTTAGCCCTGTTTTGGCGTCAGATGTCATTCATGCAAACAGGAAGGATATTCCCTGTATCTTCAGA
Seq A exon
GTGACAGCATCACAGCTCTGCGCCTCCAGCAATAAAAAATGCTCCATTTTGATCCTGGCCGACAGCGATCAGGAAAGAACAAAGTGGGTCGGCCTTTTGAAGGAGCTGCACCGGCTCTTGAAGAAAAGCAAACTGAAAGAACGCTTTGTTTACGTCCCTAAAGAAGCATATGACTGCGCACTGCCTCTCATCAAAACCACACAGTCTGCTGCTATTATAG
Seq C2 exon
ATCATGAGAGGATTGCTCTGGGAAACGAGGAGGGGTTATACGTTATTCATGTTACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104283-'29-34,'29-33,30-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGGAATTTTCTGTTAGCCCT
R:
ATGAATAACGTATAACCCCTCCTCG
Band lengths:
132-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]