GgaEX6028836 @ galGal3
Exon Skipping
Gene
ENSGALG00000009158 | CDC42BPA
Description
NA
Coordinates
chr3:13318860-13321224:+
Coord C1 exon
chr3:13318860-13318941
Coord A exon
chr3:13320098-13320314
Coord C2 exon
chr3:13321162-13321224
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGTATTTAAAATTTTTTCAGGTC
3' ss Score
8.91
5' ss Seq
TAGGTATGA
5' ss Score
6.99
Exon sequences
Seq C1 exon
GGATGAAGAATTCTCAGTGAGTTCTGTCTTGGCTTCGGATGTCATCCATGCAAATCGAAAAGATATCCCCTGTATCTTTAGA
Seq A exon
GTCACAGCTTCCCAACTCTCTGCAACCAGTAATAAGTGTTCAATCCTGATTCTAACAGACGGTGAGAATGAAAAAAGCAAGTGGGTAGGAGTGCTGAATGAATTGCATAGGATCTTGAAGAAAAACAAACTCAAAGACCGCTCAGTCTATGTTCCCAAAGAAGCTTATGACAGCACCTTACCCCTCATCAAAACAACGCAGTCAGCAGCAATCATAG
Seq C2 exon
ATCATGAAAGAATAGCACTGGGGAATGAAGAAGGGTTATTTGTTGTGCATGTCACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009158-'32-40,'32-38,33-40=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATTCTCAGTGAGTTCTGTCT
R:
GTGACATGCACAACAAATAACCCT
Band lengths:
134-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]