MmuEX6029635 @ mm10
Exon Skipping
Gene
ENSMUSG00000026490 | Cdc42bpa
Description
CDC42 binding protein kinase alpha [Source:MGI Symbol;Acc:MGI:2441841]
Coordinates
chr1:180139723-180142339:+
Coord C1 exon
chr1:180139723-180139804
Coord A exon
chr1:180141342-180141558
Coord C2 exon
chr1:180142277-180142339
Length
217 bp
Sequences
Splice sites
3' ss Seq
TGACTATTAAATTGTTTTAGGTC
3' ss Score
9.69
5' ss Seq
TAGGTAGGA
5' ss Score
7
Exon sequences
Seq C1 exon
AGATGAAGAATTTTCTGTGAGTTCAGTCTTAGCTTCTGATGTTATTCACGCAAGTCGAAAAGATATCCCCTGTATATTCAGG
Seq A exon
GTCACAGCTTCCCAGCTCTCAGCACCTAGTAACAAATGTTCCATCCTGATGCTAGCAGACAGCGAGAATGAGAGGAGTAAGTGGGTGGGAGTGCTGAGTGAACTCCACAAGATTCTGAAGAAAAACAAGTTCAGAGACCGCTCAGTGTATGTCCCCAAGGAGGCGTACGACAGCACGCTACCCCTCATTAAGACAACGCAGGCCGCTGCAATCATAG
Seq C2 exon
ATCATGAACGGATAGCTTTGGGAAATGAAGAAGGATTATTTGTTGTGCATGTCACCAAAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026490-'70-74,'70-71,72-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0078017=CNH=PU(1.9=6.8)
C2:
PF0078017=CNH=FE(7.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGAATTTTCTGTGAGTTCAGTCT
R:
GTGACATGCACAACAAATAATCCT
Band lengths:
134-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types