DreEX6049266 @ danRer10
Exon Skipping
Gene
ENSDARG00000061976 | sema6bb
Description
sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6Bb [Source:ZFIN;Acc:ZDB-GENE-081105-129]
Coordinates
chr8:18937797-18947368:-
Coord C1 exon
chr8:18947189-18947368
Coord A exon
chr8:18940987-18941127
Coord C2 exon
chr8:18937797-18937874
Length
141 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTTCCAGGTG
3' ss Score
13.04
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
ATACCAGCTCAACAAGATGGTGGTGGACACAAACGCCGGGCCTTATGGGAACCAGACAGTGCTTTTCCTGGGATCAAGCCGAGGAACCATCCTCAAATTTCTGGTCACCCCTAACAGGGATAACACCGTGACCAACAACAACGTGTTCCTTGAGGAATTTGAAGGCTACAACCCTGACAG
Seq A exon
GTGTGGGACGGATTCTCCTCAGGCCAGGCAGCTGCTCTCTCTCACGCTGGACCGCATCAGTCACAGCCTCCTACTGACTTTCCCATCGTGCGTGATCAAAGTGCCTGTAGCTCGATGCCAACTCTATTCCGCCTGCATGAA
Seq C2 exon
GAACTGCATCGCCTCACGAGACCCCTACTGCGGCTGGACCACAGGAGACATCTGCTCGTTCCTCCGCGCGGGCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061976-'14-22,'14-21,15-22=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.012 A=0.031 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(14.3=100)
A:
PF0140314=Sema=PD(0.7=6.2),PF0143720=PSI=PU(13.8=18.8)
C2:
PF0143720=PSI=FE(40.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCAACAAGATGGTGGTG
R:
CGGAGGAACGAGCAGATGTCT
Band lengths:
242-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]