DreEX6050292 @ danRer10
Exon Skipping
Gene
ENSDARG00000007560 | sema3bl
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3bl [Source:ZFIN;Acc:ZDB-GENE-030131-2956]
Coordinates
chr8:26520279-26534847:+
Coord C1 exon
chr8:26520279-26520436
Coord A exon
chr8:26531253-26531315
Coord C2 exon
chr8:26534728-26534847
Length
63 bp
Sequences
Splice sites
3' ss Seq
TTTTTCCTCTTTATCTCCAGATC
3' ss Score
12.22
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
ATCTTCTGGACACAAATCGTACCTCAGTTTTCAACGGGTTACACGGAGATCTGCACTTGTCGGCTGTGTTTTTGGATGAATATCATGACAGGCTTTTCCTGGGAGGGAAGGATGTTCTCTACTCACTCAGACTGGATCACACGCATGATGCTAAAGAG
Seq A exon
ATCCATTGGCCTTCGTTGCCTGGTAATCGTGAAGACTGTATTCTCAAAGGGAAAGATCCCGAG
Seq C2 exon
ATGGAGTGTGCAAATTTTGTACGTCTGCTGCAGCCATTTAACCGCACCCATCTACTGGCCTGTGGAACTGGAGCTTTCCAACCCGTGTGTGCGTATGTGAACGTCGGACACCGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000007560-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.0=62.3)
A:
PF0140314=Sema=FE(4.3=100)
C2:
PF0140314=Sema=FE(8.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAGGGAAGGATGTTCT
R:
GGAAAGCTCCAGTTCCACAGG
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]