HsaEX0057085 @ hg19
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:30400]
Coordinates
chr3:52476201-52479043:-
Coord C1 exon
chr3:52478929-52479043
Coord A exon
chr3:52476575-52476637
Coord C2 exon
chr3:52476201-52476320
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCAGCGGGGCTGTGTTCCAGGTC
3' ss Score
6.18
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATGGCCCCCTCGGCCTGGGCCATTTGCTGGCTGCTAGGGGGCCTCCTGCTCCATGGGGGTAGCTCTGGCCCCAGCCCCGGCCCCAGTGTGCCCCGCCTGCGGCTCTCCTACCGAG
Seq A exon
GTCCTGTGGCCACCGCAGCCAGGACAGAGGGAGGAGTGTGTTCGAAAGGGAAGAGATCCTTTG
Seq C2 exon
ACAGAGTGCGCCAACTTCGTGCGGGTGCTACAGCCTCACAACCGGACCCACCTGCTAGCCTGTGGCACTGGGGCCTTCCAGCCCACCTGTGCCCTCATCACAGTTGGCCACCGTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.619 C2=0.117
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=FE(18.0=100)
C2:
PF0140314=Sema=FE(35.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTTGCTGGCTGCTAGGGG
R:
GTTGTGAGGCTGTAGCACCC
Band lengths:
137-200
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)