HsaEX0057085 @ hg38
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52442185-52442907:-
Coord C1 exon
chr3:52442747-52442907
Coord A exon
chr3:52442559-52442621
Coord C2 exon
chr3:52442185-52442304
Length
63 bp
Sequences
Splice sites
3' ss Seq
TCAGCGGGGCTGTGTTCCAGGTC
3' ss Score
6.18
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTCCTGTCTGCCAACCGCTCTGCCATCTTTCTGGGCCCCCAGGGCTCCCTGAACCTCCAGGCCATGTACCTAGATGAGTACCGAGACCGCCTCTTTCTGGGTGGCCTGGACGCCCTCTACTCTCTGCGGCTGGACCAGGCATGGCCAGATCCCCGGGAG
Seq A exon
GTCCTGTGGCCACCGCAGCCAGGACAGAGGGAGGAGTGTGTTCGAAAGGGAAGAGATCCTTTG
Seq C2 exon
ACAGAGTGCGCCAACTTCGTGCGGGTGCTACAGCCTCACAACCGGACCCACCTGCTAGCCTGTGGCACTGGGGCCTTCCAGCCCACCTGTGCCCTCATCACAGTTGGCCACCGTGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.619 C2=0.117
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(30.6=63.0)
A:
PF0140314=Sema=FE(18.0=100)
C2:
PF0140314=Sema=FE(35.1=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGATGAGTACCGAGACCGCC
R:
GGTTGTGAGGCTGTAGCACC
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development