BtaEX6094871 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:49001531-49002149:+
Coord C1 exon
chr22:49001531-49001691
Coord A exon
chr22:49001815-49001877
Coord C2 exon
chr22:49002030-49002149
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTGACCTGGCTGTGTTTCAGGTC
3' ss Score
10.08
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTCCTATCTGCCAACCGTTCTGCCATCTTTCTGGGCCCCCGGGGCTCCCTGGACCTTCAGGCCCTGTACCTGGACGAGTACCGGGACCGACTGTTTCTGGGCGGCCGTGATGCCATCTATTCTCTGCGGTTGGACCAGACATGGCCAGATCCCCGGGAG
Seq A exon
GTCCTGTGGCCACCACAGCCCGGACAGAGAGAGGAGTGCGTTCACAAGGGAAGAGATCCTTTG
Seq C2 exon
GTGGAGTGCGCCAACTTTGTGCGGGTGCTGCACCCCCACAACCGGACCCACCTGCTGGCGTGTGGCACTGGCGCCTTCCAGCCCACCTGTGCCCTCCTTGCTGTTGGGCATCGTGGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=0.524 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCTGCGGTTGGACCAGA
R:
CAACAGCAAGGAGGGCACAG
Band lengths:
147-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]