GgaEX6009861 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr12:2483159-2483595:+
Coord C1 exon
chr12:2483159-2483319
Coord A exon
chr12:2483397-2483459
Coord C2 exon
chr12:2483563-2483595
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCACGGTTGTGTGGTTGCAGATC
3' ss Score
7.45
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCTGCTGAAGTCCAACAGCTCCCAGTGGCTGCTGGCCCCAGGGGATGTGCCGGGCTCCCAGGCGCTGCTGCTGGATGAGGACAGGGCCTGGCTGATGGTGGGATCCAAGAACCACATCATCCTGCTGCACCTGGAGCAGCCGGGCAGGGAGCCCGAGAAG
Seq A exon
ATCTCCTGGCCGGCACCCAGGGCGCAGGTGGAGCACTGCCGGCTGGCAGGCAAGGACGTGGAG
Seq C2 exon
ACCGAGTGTGCCAACTTCATCCGCCTCCTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.8=63.0)
A:
PF0140314=Sema=FE(4.6=100)
C2:
PF0140314=Sema=FE(2.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCTGCTGCTGGATGAG
R:
TTGGAGGAGGCGGATGAAGTT
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]