DreEX0065058 @ danRer10
Exon Skipping
Gene
ENSDARG00000011163 | sema3fa
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3Fa [Source:ZFIN;Acc:ZDB-GENE-050513-1]
Coordinates
chr6:42822708-42893068:+
Coord C1 exon
chr6:42822708-42822877
Coord A exon
chr6:42885148-42885210
Coord C2 exon
chr6:42892975-42893068
Length
63 bp
Sequences
Splice sites
3' ss Seq
ATCTTTGTGTTTTTCCTCAGATT
3' ss Score
11.57
5' ss Seq
AATGTAAGA
5' ss Score
5.55
Exon sequences
Seq C1 exon
GACTGATAAATCTCTTGTGGGTTTTATGGATAAAGTGATCATGCAGGGAGCCGGGACTTTGGTGCTGGGGACCCTTCTGGTCTCTGTATTCTCAGCTGTCTCGGTCCACAGCAGCCCTTTGTCTTCCCTGCCACCCGCCTCTGTTCCACGAGTCTTCCTGTCCTTCAAAG
Seq A exon
ATTCACTGGCCTGTAGCTCCACAGAAAAGGACTGAATGTGTACTCTCAGGGAAAGACATCAAT
Seq C2 exon
GAATACATTTTCCGACTGGAGCCTGGTAAAGTAGATTCTGGGAAAGGAAAATGCCCCTACGACCCCAAACTCAACAGCGTCTCAGCTTTGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011163_MULTIEX1-2/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0140314=Sema=FE(4.2=100)
C2:
PF0140314=Sema=FE(6.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCTCAGCTGTCTCGGTCCA
R:
AGGGGCATTTTCCTTTCCCAG
Band lengths:
141-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]