MmuEX6068696 @ mm9
Exon Skipping
Gene
ENSMUSG00000034684 | Sema3f
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:MGI Symbol;Acc:MGI:1096347]
Coordinates
chr9:107594499-107595047:-
Coord C1 exon
chr9:107594887-107595047
Coord A exon
chr9:107594720-107594782
Coord C2 exon
chr9:107594499-107594618
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTAACCTTCATCTTTGGCAGATC
3' ss Score
8.81
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AACTTAAGGCCACCGGTACCGCCCACTTCTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGCTCAAGGATGAGGACCATGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTATT
Seq A exon
ATCCATTGGGCAGCCTCCCCGCAGCGCATTGAGGAGTGCATACTGTCAGGCAAGGATGGCAAT
Seq C2 exon
GGAGAGTGTGGTAACTTCGTCCGGCTCATCCAGCCTTGGAACCGAACACACCTGTATGTGTGTGGGACCGGTGCCTACAACCCCATGTGCACCTATGTGAACCGTGGCCGTCGCGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034684-'7-4,'7-2,8-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(27.6=63.0)
A:
PF0140314=Sema=FE(16.3=100)
C2:
PF0140314=Sema=FE(31.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGACATCAACCGAGAGC
R:
CACGGTTCACATAGGTGCACA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: