GgaEX1056949 @ galGal4
Exon Skipping
Gene
ENSGALG00000013370 | Sema3F
Description
semaphorin-3F precursor [Source:RefSeq peptide;Acc:NP_989589]
Coordinates
chr12:3177468-3178543:+
Coord C1 exon
chr12:3177468-3177628
Coord A exon
chr12:3177715-3177777
Coord C2 exon
chr12:3178424-3178543
Length
63 bp
Sequences
Splice sites
3' ss Seq
CATCTGCCCTGTTTCCGCAGATC
3' ss Score
12.22
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AGCTGAAGGCCACCGGCACCGCGCACTTCTTCAACTTCCTGCTCAACTCCAGTGACTACCGCATCCTGCTGAAGGACGAGGACCACGACCGCATGTACGTGGGCAGCAAGGACTACGTCCTCTCTCTGGACCTGCACGACATCAACCGCGAGCCCCTCATC
Seq A exon
ATCCACTGGCCTGCCTCCCAGCAGAGGATCGAGGAGTGCATCCTGTCGGGCAAGAACAGCAAT
Seq C2 exon
GGGGAGTGTGGCAACTTCATCCGCCTGATCCAGCCCTGGAACCGGACTCACCTCTACGTGTGCGGCACCGGCGCCTACAACCCCATCTGCGCCTTCATCAACCGTGGGCGCAAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013370-'7-5,'7-4,8-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.7=63.0)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTCCAGTGACTACCGCA
R:
GATGAAGTTGCCACACTCCCC
Band lengths:
140-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]