RnoEX6037494 @ rn6
Exon Skipping
Gene
ENSRNOG00000017704 | Sema3f
Description
semaphorin 3F [Source:RGD Symbol;Acc:1308514]
Coordinates
chr8:116450998-116451546:-
Coord C1 exon
chr8:116451386-116451546
Coord A exon
chr8:116451219-116451281
Coord C2 exon
chr8:116450998-116451117
Length
63 bp
Sequences
Splice sites
3' ss Seq
CTAACCTCCATCTTTGGCAGATC
3' ss Score
8.59
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
AACTTAAGGCCACAGGTACTGCCCACTTCTTCAACTTTCTGCTCAACACTACAGACTACAGAATCCTGTTCAAGGACGAGGACCATGACCGCATGTATGTGGGCAGCAAGGACTACGTGCTGTCCCTGGACCTGCATGACATCAACCGAGAGCCCCTTATT
Seq A exon
ATCCACTGGGCAGCCTCCCCACAGCGCATTGAGGAGTGCATATTGTCAGGCAAGGATGGCAAC
Seq C2 exon
GGAGAGTGTGGGAACTTCGTCAGACTCATCCAGCCCTGGAACCGGACACACCTGTACGTGTGCGGGACCGGTGCCTACAACCCCATGTGCACCTATGTGAACCGTGGCCGTCGCTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017704-'8-6,'8-5,10-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(28.1=63.0)
A:
PF0140314=Sema=FE(16.5=100)
C2:
PF0140314=Sema=FE(32.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCATGACATCAACCGAGAGC
R:
CACGGTTCACATAGGTGCACA
Band lengths:
135-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]