GgaEX6009861 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NNM9]
Coordinates
chr12:2653787-2654310:+
Coord C1 exon
chr12:2653787-2653947
Coord A exon
chr12:2654025-2654087
Coord C2 exon
chr12:2654191-2654310
Length
63 bp
Sequences
Splice sites
3' ss Seq
CCACGGTTGTGTGGTTGCAGATC
3' ss Score
7.45
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
AGCTGCTGAAGTCCAACAGCTCCCAGTGGCTGCTGGCCCCAGGGGATGTGCCGGGCTCCCAGGCGCTGCTGCTGGATGAGGACAGGGCCTGGCTGATGGTGGGATCCAAGAACCACATCATCCTGCTGCACCTGGAGCAGCCGGGCAGGGAGCCCGAGAAG
Seq A exon
ATCTCCTGGCCGGCACCCAGGGCGCAGGTGGAGCACTGCCGGCTGGCAGGCAAGGACGTGGAG
Seq C2 exon
ACCGAGTGTGCCAACTTCATCCGCCTCCTCCAACCCTACAACAGCAGCCACGTGTTGGCCTGCGGGACCGGCGCCTATCAGCCCGTCTGCGCCTTCGTGCAGCTGGGAGCCCACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003203-'1-3,'1-2,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=0.190 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGCTGGATGAGGACAG
R:
TGCTGTTGTAGGGTTGGAGGA
Band lengths:
142-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]