MmuEX6040490 @ mm10
Exon Skipping
Gene
ENSMUSG00000021904 | Sema3g
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:MGI Symbol;Acc:MGI:3041242]
Coordinates
chr14:31220559-31221240:+
Coord C1 exon
chr14:31220559-31220719
Coord A exon
chr14:31220830-31220892
Coord C2 exon
chr14:31221121-31221240
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTTGTGGGCTGTGTTTCAGGTC
3' ss Score
9.03
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCTCCTGTCTACCAACCGCTCTGCCATCTTTCTGGGCCCACGGGGTTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGAGATCGCCTCTTTCTGGGAAGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGACCCCCGGGAG
Seq A exon
GTCTTGTGGCTGCCACAGCCAGGACAGAAGGTGGAATGTGTCCGCAAGGGAAAAGACCCTTTG
Seq C2 exon
ACGGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCATAACCGGACCCATCTGCTGGCCTGTGGCACAGGAGCCTTCCAACCCATCTGCACCTTCATCACAGTGGGGCATCGAGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021904-'8-3,'8-2,9-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCGCCTCTTTCTGGGAAGC
R:
CAGCAGATGGGTCCGGTTATG
Band lengths:
132-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types