RnoEX6054746 @ rn6
Exon Skipping
Gene
ENSRNOG00000018952 | Sema3g
Description
semaphorin 3G [Source:RGD Symbol;Acc:1306079]
Coordinates
chr16:7306220-7306902:+
Coord C1 exon
chr16:7306220-7306380
Coord A exon
chr16:7306491-7306553
Coord C2 exon
chr16:7306783-7306902
Length
63 bp
Sequences
Splice sites
3' ss Seq
GCTTGCTGGCTGTGTTTCAGGTC
3' ss Score
9.13
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
Exon sequences
Seq C1 exon
ATCTCCTGACTACCAACCGCTCTGCCATCTTTCTGGGTCCACGGGGCTCCCTAGACCTCCAAGTCATGTACCTGGATGAGTATCGGGACCGCCTCTTTCTGGGAGGCCGAGATGCCCTTTACTCTCTGAGACTGGATCAGGCATGGCCAGATCCCCGGGAG
Seq A exon
GTCTTGTGGCCGCCGCAGCCCGGACAGAAGGTGGAATGTGTCCGAAAGGGAAAAGACCCTTTG
Seq C2 exon
ACCGAGTGTGCCAACTTCGTGCGGGTCTTACAACCCCACAACCGGACCCATCTGCTGGCCTGCGGCACTGGCGCCTTCCAGCCCATCTGCACCTTCATCACAGTGGGGCATCGGGGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018952-'4-2,'4-1,5-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.143 C2=0.000
Domain overlap (PFAM):
C1:
PF0140314=Sema=PU(7.6=63.0)
A:
PF0140314=Sema=FE(4.5=100)
C2:
PF0140314=Sema=FE(8.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGATGAGTATCGGGACC
R:
CGGTTGTGGGGTTGTAAGACC
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]