DreEX6050630 @ danRer10
Exon Skipping
Gene
ENSDARG00000068400 | znf131
Description
zinc finger protein 131 [Source:ZFIN;Acc:ZDB-GENE-040426-1563]
Coordinates
chr8:31401751-31406359:-
Coord C1 exon
chr8:31406258-31406359
Coord A exon
chr8:31402522-31402666
Coord C2 exon
chr8:31401751-31402424
Length
145 bp
Sequences
Splice sites
3' ss Seq
TGTCTTATTACCTCAAACAGGTG
3' ss Score
7.64
5' ss Seq
CAGGTTACT
5' ss Score
0.49
Exon sequences
Seq C1 exon
GCCATCAGTTTAGAGCCCACAAAGCTGTTCTGGCTGCCTGCAGTCAGTTTTTCCACAAATTCTTTCAGGACTTCACTCAAGAGCCTCTAGTGGAGATTGAAG
Seq A exon
GTGTTAGCAACTCTGCCTTTCGCCATCTAATGGAGTTCACTTATACAGCTACATTAGCTGTGAATGGTGAGGAGGAAGTCAGTGATGTCTGGCGAGCTGCAGAATACCTTCAAATGCAGGAGGCAATCAAAGCCTTAAACAACAG
Seq C2 exon
AAGGAATGGTACTACCTCCCCCCAGCCCGGAAAGAGCAAGGCTAAGAAGAGGAAGATATCAGAGACCTCCAATGTAATCACTGAATCTCTTCCTTCAGCGGACACAGAAGCTGTTGAAATTGAGGTGGAAGTTGGCGAGGAGCACATCGAGGTTGAGGAAAGCGGTCTGGTGGAGGTGGTGGACGTGGCCCGGGGCACCACTGTACCCTCTTCAGATGACTCTGCTTTGGCTTTGCTGGCTGACATCACTAGCAAGTACCAGCAGGGAGAGCAGACACTTCACGTCATAAAAAAGGTTGATGAGACTGTAGTTGTGCAGGAGGAGGCAGTGGTGGCCTCCAAGACACTGGAGAACATTGAAGTGGTGGAGGTTCAGATCTCTCAGCTCGACAACCTTTTCCGGTGCGATAAGTGTGACCGCTGCTTCAAACTCTACTATCACCTCAAACAGCACATGAAGACTCATATCGCCTCCCCAGAAAGAGGCTTTGTTTGCAGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068400-'5-3,'5-2,6-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.142
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.4=100)
A:
PF0065126=BTB=FE(45.7=100)
C2:
PF0065126=BTB=PD(3.8=1.8),PF134651=zf-H2C2_2=WD(100=12.4),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCCCACAAAGCTGTTCTG
R:
CGCTTTCCTCAACCTCGATGT
Band lengths:
255-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]