HsaEX0073021 @ hg19
Exon Skipping
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:12915]
Coordinates
chr5:43123311-43161708:+
Coord C1 exon
chr5:43123311-43123412
Coord A exon
chr5:43139267-43139411
Coord C2 exon
chr5:43161351-43161708
Length
145 bp
Sequences
Splice sites
3' ss Seq
AATGTACATCTTCTTTACAGGTG
3' ss Score
9.51
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACACCATTTTAAGGCTCACAAGGCTGTTTTGGCTGCTTGTAGTAAGTTCTTCTACAAATTCTTTCAGGAGTTTACCCAAGAACCATTGGTGGAGATAGAAG
Seq A exon
GTGTTAGTAAAATGGCCTTTCGCCATTTAATTGAGTTCACATATACAGCAAAATTAATGATACAAGGAGAAGAAGAAGCCAATGATGTATGGAAAGCAGCAGAGTTTCTACAAATGCTAGAAGCTATCAAAGCCCTTGAAGTCAG
Seq C2 exon
GAACAAAGAAAACTCAGCTCCCTTAGAGGAAAATACCACAGGAAAAAATGAGGCCAAAAAAAGGAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCATTGCCATCTGCAGAATCAGAACCTGTTGAAATTGAGGTAGAGATTGCCGAAGGCACCATTGAAGTGGAAGATGAAGGCATCGAAACATTAGAGGAAGTGGCTTCTGCCAAGCAGTCCGTAAAGTACATACAGAGCACAGGTTCCTCTGATGATTCTGCTCTAGCACTGTTGGCAGATATTACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTAAAGAAGATGGCTGTCCATCTGACCCCACGAGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262_MULTIEX1-2/5=C1-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.007 A=0.000 C2=0.563
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
PF0065126=BTB=FE(45.3=100)
C2:
PF0065126=BTB=PD(4.7=2.2),PF0009621=zf-C2H2=WD(100=10.0),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGCTGTTTTGGCTGCTTG
R:
TCCACTTCAATGGTGCCTTCG
Band lengths:
251-396
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)