GgaEX6049116 @ galGal3
Exon Skipping
Gene
ENSGALG00000014859 | ZNF131
Description
NA
Coordinates
chrZ:13028263-13032025:+
Coord C1 exon
chrZ:13028263-13028364
Coord A exon
chrZ:13028960-13029104
Coord C2 exon
chrZ:13031781-13032025
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTTCTTAACAGGTG
3' ss Score
13.64
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCCACCATTTCAAAGCTCATAAAGCTGTTCTTGCTGCCTGTAGCCAGTTCTTCTACAGATTCTTCCAAGATTTCACTCAGGAGCCCTTGGTGGAGATTGAAG
Seq A exon
GTGTAAGTAACATGGCATTTCGTCACCTAATAGAATTCACCTATACAGCAAAACTAATGGTCCAAGGTGAGGAAGAAGCAAATGACGTTTGGAAAGCAGCTGAATATCTACAGATGTTAGAAGCCATCAAAGCTCTTGAAATCAG
Seq C2 exon
AAACAAAGAAAATTCATCAGCCTTAGAATCAAATCGAACAGAAGGTAAAACTAAACCGAAAAAGAGGAAGATAGCTGAAACATCTAATGTTATCACAGAATCACTGCCATCTGCAGAATCAGAGCCCGTTGAAATTGAAGTTGAGATTGCCGAGGGAACAATTGAAGTGGAAGAAGATAGCATCGAGACAATAGAGGAAGTAGCTTCTGCAGAGCAGTCCATAAAGTATATACAGACAAGAATCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.410
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
PF0065126=BTB=FE(45.3=100)
C2:
PF0065126=BTB=PD(4.7=6.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTTCTTGCTGCCTGT
R:
TGTTCCCTCGGCAATCTCAAC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]