GgaEX6049116 @ galGal4
Exon Skipping
Gene
ENSGALG00000014859 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chrZ:13476431-13479942:+
Coord C1 exon
chrZ:13476431-13476532
Coord A exon
chrZ:13477128-13477272
Coord C2 exon
chrZ:13479254-13479942
Length
145 bp
Sequences
Splice sites
3' ss Seq
CTTTTCTTTTTTCTTAACAGGTG
3' ss Score
13.64
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
GCCACCATTTCAAAGCTCATAAAGCTGTTCTTGCTGCCTGTAGCCAGTTCTTCTACAGATTCTTCCAAGATTTCACTCAGGAGCCCTTGGTGGAGATTGAAG
Seq A exon
GTGTAAGTAACATGGCATTTCGTCACCTAATAGAATTCACCTATACAGCAAAACTAATGGTCCAAGGTGAGGAAGAAGCAAATGACGTTTGGAAAGCAGCTGAATATCTACAGATGTTAGAAGCCATCAAAGCTCTTGAAATCAG
Seq C2 exon
AAACAAAGAAAATTCATCAGCCTTAGAATCAAATCGAACAGAAGGTAAAACTAAACCGAAAAAGAGGAAGATAGCTGAAACATCTAATGTTATCACAGAATCACTGCCATCTGCAGAATCAGAGCCCGTTGAAATTGAAGTTGAGATTGCCGAGGGAACAATTGAAGTGGAAGAAGATAGCATCGAGACACTTGAGGAAGTAGCTTCTGCAGAGCAGTCCATAAAGTATATACAGACAACGGGTACATCCGATGAATCTGCCTTGGCTCTTTTGGCAGATATCACTAGCAAGTATCGTCAGGGAGAGCGAAAATGCCAGATCCAAGAAAAAGTTGACAGTGCAGCTGATCCTTCATGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAACTGTCACACATGAACAATTTATTCCACTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAAACACACTCTACTGAGAGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014859-'6-4,'6-2,7-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.208
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
PF0065126=BTB=FE(45.3=100)
C2:
PF0065126=BTB=PD(4.7=2.2),PF0009621=zf-C2H2=WD(100=10.0),PF121713=zf-C2H2_jaz=WD(100=9.5),PF134651=zf-H2C2_2=PU(38.5=4.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTGTTCTTGCTGCCTGT
R:
TGTTCCCTCGGCAATCTCAAC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]