MmuEX1028374 @ mm10
Exon Skipping
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119775767-119788961:-
Coord C1 exon
chr13:119788920-119788961
Coord A exon
chr13:119782772-119782916
Coord C2 exon
chr13:119775767-119776449
Length
145 bp
Sequences
Splice sites
3' ss Seq
AACGTGAATCTTTTTTACAGGTG
3' ss Score
9.22
5' ss Seq
CAGGTAATT
5' ss Score
8.55
Exon sequences
Seq C1 exon
GACACCATTTTAAGGCCCACAAGGCTGTTTTGGCTGCCTGCA
Seq A exon
GTGTTAGTAAAATGGCTTTTCGCCACTTAATTGAGTTCACATACACAGCAAAACTAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGCTATTAAAGCACTTGAAGTCAG
Seq C2 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAAACACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATTGCAGAAACTTCAAATGTTATCACTGAATCATTACCATCTGCAGAATCAGAACCTGTGGAAATTGAGGTGGAGATTGCTGAGGGCACAATTGAAGTAGAAGATGAAGGCATCGAAGCTTTGGAGGAAATGGCTTCTGCCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGATTCCGCTCTGGCGTTGTTGGCAGATATCACCAGCAAGTACCGTCAAGGTGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCATTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870_MULTIEX1-2/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.266
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
PF0065126=BTB=FE(45.3=100)
C2:
PF0065126=BTB=PD(4.7=2.2),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Skipping Isoform:
ENSMUST00000178271fB19829
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACCATTTTAAGGCCCACA
R:
GCCATTTCCTCCAAAGCTTCG
Band lengths:
243-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types