RnoEX0101037 @ rn6
Exon Skipping
Gene
ENSRNOG00000015925 | Zfp131
Description
zinc finger protein 131 [Source:RGD Symbol;Acc:1307638]
Coordinates
chr2:52514222-52529695:-
Coord C1 exon
chr2:52529594-52529695
Coord A exon
chr2:52521127-52521271
Coord C2 exon
chr2:52514222-52514904
Length
145 bp
Sequences
Splice sites
3' ss Seq
TAATGTGCATCTTTTTACAGGTG
3' ss Score
10.02
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
GACACCATTTTAAGGCACACAAGGCTGTTCTGGCTGCCTGCAGTAAGTTCTTCTACAAATTCTTTCAGGAGTTCACTCAAGAACCTTTGGTTGAAATTGAAG
Seq A exon
GTGTTAGTAAAATGGCTTTTCGACACTTAATTGAGTTCACATACACAGCAAAGCTAATGATACAAGGGGAAGAAGAAGCCAATGATGTGTGGAAAGCAGCAGAGTTTCTACAAATGCTGGAAGCTATTAAAGCACTTGAAGTCAG
Seq C2 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAACTACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATCGCAGAAACTTCCAATGTTATCACCGAGTCCTTGCCATCTGCAGAATCAGAACCTGTGGAAATCGAGGTGGAGATTGCTGAAGGCACAATTGAAGTAGAAGACGAAGGCATTGCAGCTTTGGAGGAAATGGCTTCTGGCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGACTCTGCTCTAGCACTGTTGGCAGATATCACCAGCAAGTACCGTCCAGGCGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAGGTATTGAAATTGTGGAACTTCAGCTGTCACATGTGAAGGACTTGTTCCATTGTGAGAAATGTAACCGTTCGTTTAAATTGTTTTACCATTTTAAGGAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015925-'2-5,'2-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.290
Domain overlap (PFAM):
C1:
PF0065126=BTB=FE(32.1=100)
A:
PF0065126=BTB=FE(45.3=100)
C2:
PF0065126=BTB=PD(4.7=2.2),PF128742=zf-met=WD(100=9.2),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGCACACAAGGCTGTTCTG
R:
GCCTTCAGCAATCTCCACCTC
Band lengths:
245-390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]