DreEX6056271 @ danRer10
Exon Skipping
Gene
ENSDARG00000078322 | col12a1a
Description
collagen, type XII, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090728-1]
Coordinates
chr17:49700221-49700970:-
Coord C1 exon
chr17:49700899-49700970
Coord A exon
chr17:49700672-49700707
Coord C2 exon
chr17:49700221-49700287
Length
36 bp
Sequences
Splice sites
3' ss Seq
TCTTCATCTATCCATCACAGGGA
3' ss Score
7.88
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GGACCACCGGGAGCTCCCGGAATGCCAGGAATCACCGGAAAACCAGGAAAACCCGGAGACACTGGCTTTCCT
Seq A exon
GGACCTGTTGGCATGAAAGGAGAGAAGGGTGAAAGA
Seq C2 exon
GGAGACACTGCGTCACAGAATATGATGCGCTCTGTAGCGAGACAAGTCTGCGAACAGCTAGTCAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078322-'65-67,'65-65,66-67=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PU(51.2=95.5)
A:
PF0139113=Collagen=FE(17.7=100)
C2:
PF0139113=Collagen=PD(11.3=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCCGGAATGCCAGGAATCA
R:
TCGCAGACTTGTCTCGCTACA
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]