RnoEX0022818 @ rn6
Exon Skipping
Gene
ENSRNOG00000058470 | Col12a1
Description
collagen type XII alpha 1 chain [Source:RGD Symbol;Acc:2374]
Coordinates
chr8:87047871-87051047:-
Coord C1 exon
chr8:87050976-87051047
Coord A exon
chr8:87048030-87048065
Coord C2 exon
chr8:87047871-87047937
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATAAATTATCTGTGTTTCAGGGT
3' ss Score
8.98
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAACCCCAGGCTCTCCAGGAGTCACAGGGCCAAGTGGGAAACCGGGAAAACCTGGAGATCATGGCCGACCT
Seq A exon
GGTCAATCTGGGTTAAAAGGAGAAAAAGGTGATAGG
Seq C2 exon
GGAGACATTGCTTCCCAGAACATGATGCGAGCTGTTGCAAGACAAGTGTGTGAACAACTGATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058470-'84-90,'84-89,85-90
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=FE(37.7=100)
A:
PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=PD(9.8=26.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGGCTCTCCAGGAGTC
R:
TTGTCTTGCAACAGCTCGCAT
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]