MmuEX0012133 @ mm10
Exon Skipping
Gene
ENSMUSG00000032332 | Col12a1
Description
collagen, type XII, alpha 1 [Source:MGI Symbol;Acc:MGI:88448]
Coordinates
chr9:79605154-79608491:-
Coord C1 exon
chr9:79608420-79608491
Coord A exon
chr9:79605330-79605365
Coord C2 exon
chr9:79605154-79605220
Length
36 bp
Sequences
Splice sites
3' ss Seq
ATAACATATCTGTGTTTCAGGGT
3' ss Score
10.02
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GGAAGCCCAGGCTCTCCAGGAGTCACAGGGCCAAGTGGGAAACCAGGAAAACCTGGAGACCATGGCAGACCT
Seq A exon
GGTCAATCTGGCTTAAAAGGAGAAAAAGGTGATAGG
Seq C2 exon
GGAGACATCGCTTCCCAGAACATGATGCGAGCGGTTGCAAGACAAGTCTGCGAACAACTGATCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032332-'79-77,'79-76,80-77
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(3.3=8.7),PF0139113=Collagen=FE(34.9=100)
A:
PF0139113=Collagen=FE(18.0=100)
C2:
PF0139113=Collagen=PD(11.9=30.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTCTCCAGGAGTCACAGG
R:
AGACTTGTCTTGCAACCGCTC
Band lengths:
112-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types