DreEX6056390 @ danRer10
Exon Skipping
Gene
ENSDARG00000027867 | paplna
Description
papilin a, proteoglycan-like sulfated glycoprotein [Source:ZFIN;Acc:ZDB-GENE-070815-4]
Coordinates
chr17:51044353-51049216:-
Coord C1 exon
chr17:51049058-51049216
Coord A exon
chr17:51047296-51047423
Coord C2 exon
chr17:51044353-51044425
Length
128 bp
Sequences
Splice sites
3' ss Seq
ATCAGTCATTCATAATCTAGGCA
3' ss Score
4.85
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
TTGGACGGCTGAAGGTGTGAGTATAGACAAGACGGATCCCTCCACGGTGGAGGGGCTGGTTGGTCAGCGGGTGGTGCTGCCCTGCAGGGTGACCCCACCACCCTCCTCCGCTGTACTTGTGGAGTGGAGGCGTGATGGTGTCCCTGTCGATCCCACTAG
Seq A exon
GCATGAGCAGCAGTTGGACGGCTCTCTGTTGGTGGGTCCCATAACACTGCAGGACTCCGGCTGGTTTCTGTGTGTGGCCACAAGAGATGATAAAAGAGATCACCGCTACATTTACCTGTCTGTGTCAG
Seq C2 exon
GATCTTCCCAAAACAATGCAGGAATATCAGAGGTGGATTCTTCACAGTCGTACACATCACAGTCTTCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000027867-'27-29,'27-28,29-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=0.182 C2=0.360
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PU(50.0=85.2)
A:
PF138951=Ig_2=FE(46.7=100)
C2:
PF138951=Ig_2=PD(2.2=8.0),PF0767911=I-set=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGCTGAAGGTGTGAGTA
R:
CTGGAGGAAGACTGTGATGTGT
Band lengths:
230-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]