RnoEX6029282 @ rn6
Exon Skipping
Gene
ENSRNOG00000009448 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:RGD Symbol;Acc:1311176]
Coordinates
chr6:107267586-107268501:+
Coord C1 exon
chr6:107267586-107267723
Coord A exon
chr6:107267972-107268096
Coord C2 exon
chr6:107268348-107268501
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCCCCTCCCTCCATTCAGGTA
3' ss Score
12.86
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GATCAACTTGGCAGACTCGGAACCGTCCCTGGTACAGGCAGCTCCAGGGCAGGCGGTCCAACTCTTTTGCCCTGGCAACATCCCCCCGGAATTCCAGGCAGGGTGGCAGAAAGAGGGCCGGCCCATCTCCTCTAACAG
Seq A exon
GTACCAGCTACAGGCAGATGGCTCCCTCATCATCAGCCCCTTGAGGCCAGAAGATGCTGGCATCTATAGCTGTGGCAGCCAGAGGTCAGGCCATGAGCCCCAGAAGATACAGCTTCGAGTCACAG
Seq C2 exon
GGGGTGACATGGCAGTGTTGTCTGAGGTCCAGCCGAGGCATTTCCCTGAGACCAGGAATCCAGACCCTGGTCACAGTCCTCAGAACCGTGGAATAGGAGTGGGAGCTGAGGGCCACAGGGTTCTCTCTTCCTCACACCCTAGGCCTGCCACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009448-'25-27,'25-26,27-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.860 C2=0.981
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(50.6=89.4)
A:
PF0767911=I-set=PD(48.2=93.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACTTGGCAGACTCGGAAC
R:
AGCTCCCACTCCTATTCCACG
Band lengths:
243-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]