MmuEX6081998 @ mm10
Exon Skipping
Gene
ENSMUSG00000021223 | Papln
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:MGI Symbol;Acc:MGI:2386139]
Coordinates
chr12:83782881-83783806:+
Coord C1 exon
chr12:83782881-83783018
Coord A exon
chr12:83783270-83783394
Coord C2 exon
chr12:83783653-83783806
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCTCTCTCCACTCAGGTA
3' ss Score
12.08
5' ss Seq
CAGGTTTCT
5' ss Score
-0.33
Exon sequences
Seq C1 exon
GATCCGATTGGCAGGCTCGGAACCCTCCCTGGTACAGGCAGCTCCAGGGCAGGCGGTACAACTCTTTTGCCCTGGCAACATCCCCTCGGAATTCCAGGCAGGGTGGCAGAAAGAGGGCCGGCCCATCTCCTCTAACAG
Seq A exon
GTACCAGCTCCAGGCAGATGGCTCCCTCATCATCAGCCGCTTGAGGCCGGAGGATGCTGGCATCTATAGCTGTGGCAGCCACAGGCCAGGCCATGAGCCCCAGGAGATACAGCTTCGAGTCACAG
Seq C2 exon
GGGGTGACATGGCAGTGTTTCCTGAGGGCCAGCCGAGGCATTTCCCTGAGCCCAGGAACCCAGACCTTGGCCATGGTCCTCCGCACCGTGGAACAGGAGCAGAAGCGGGGGGCCACAGGGTCCTCTCTCCCTCACACCCCAGGCCTGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021223-'18-29,'18-22,26-29=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.979 A=0.837 C2=1.000
Domain overlap (PFAM):
C1:
PF0768612=V-set=PU(52.3=97.9)
A:
PF0768612=V-set=PD(46.6=95.3)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAGGCAGCTCCAGG
R:
CTGGGGTGTGAGGGAGAGAG
Band lengths:
251-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types