GgaEX0013683 @ galGal3
Exon Skipping
Gene
ENSGALG00000009315 | PAPLN
Description
NA
Coordinates
chr5:28480870-28483048:-
Coord C1 exon
chr5:28482911-28483048
Coord A exon
chr5:28481922-28482049
Coord C2 exon
chr5:28480870-28481008
Length
128 bp
Sequences
Splice sites
3' ss Seq
GATTCCTGCTCCTGTTGTAGGCA
3' ss Score
8.17
5' ss Seq
TAGGTAATT
5' ss Score
7.27
Exon sequences
Seq C1 exon
AGCCATTCTGGAGGAAGCCAAGCCCTCTCTTGTGACAGCAATCATGGGACAAAACATCCAACTGGTCTGCAAGGCAAGTCTGTCCCCCTTCTCCAGGGTGGAGTGGATGAAGGATGGCCGGCCAGTCTCCTCTGACAG
Seq A exon
GCACACCTACCAGTCTGACAGCTCTTTAGTTATCAGCCACGTCAAGCTGGAGGATGCTGGGACTTACACATGCCTCATTTCTGATGGAAGGACAGAGAGTCGGCGGCAGATTCAGTTACAGATCGTAG
Seq C2 exon
AGTACCAGAGTGCTGTTCTGGCAGAGGGTGAGAGAGGTCAGGTCCTTCACAAGGAAAATCAGCGGCAGCGAGAGCTACCCAGAGGCGGGAAGGTTATACAGGCAGCCGGTTCCTCTGTGCATCCGCAATTCACATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009315_CASSETTE1
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.123 A=0.091 C2=0.553
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(49.4=71.9)
A:
PF0767911=I-set=PD(49.4=93.2)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTCTGGAGGAAGCCAAGCC
R:
GAACCGGCTGCCTGTATAACC
Band lengths:
247-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]