HsaEX6072086 @ hg19
Exon Skipping
Gene
ENSG00000100767 | PAPLN
Description
papilin, proteoglycan-like sulfated glycoprotein [Source:HGNC Symbol;Acc:19262]
Coordinates
chr14:73730353-73731434:+
Coord C1 exon
chr14:73730353-73730490
Coord A exon
chr14:73730919-73731043
Coord C2 exon
chr14:73731296-73731434
Length
125 bp
Sequences
Splice sites
3' ss Seq
TCCCACACCACCCCACTCAGGCA
3' ss Score
2.55
5' ss Seq
TAGGTCTCT
5' ss Score
-3.33
Exon sequences
Seq C1 exon
GATTAGCTTGGCAGGTGTGGAGCCCTCGTTGGTGCAGGCAGCCCTGGGGCAGTTGGTGCGGCTCTCCTGCTCAGACGACACTGCCCCGGAATCCCAGGCTGCCTGGCAGAAAGATGGCCAGCCCATCTCCTCTGACAG
Seq A exon
GCACAGGCTGCAGTTCGACGGATCCCTGATCATCCACCCCCTGCAGGCAGAGGACGCGGGCACCTACAGCTGTGGCAGCACCCGGCCAGGCCGCGACTCCCAGAAGATCCAACTTCGCATCATAG
Seq C2 exon
GGGGTGACATGGCCGTGCTGTCTGAGGCTGAGCTGAGCCGCTTCCCTCAGCCCAGGGACCCAGCTCAGGACTTTGGCCAAGCGGGGGCTGCTGGGCCCCTGGGGGCCATCCCCTCTTCACACCCACAGCCTGCAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000100767-'23-28,'23-25,25-28=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.599 A=0.556 C2=0.824
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(50.0=87.2)
A:
PF0767911=I-set=PD(48.8=93.0)
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGTGGAGCCCTCGTTG
R:
CTGTGGGTGTGAAGAGGGGAT
Band lengths:
254-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)