DreEX6057003 @ danRer10
Exon Skipping
Gene
ENSDARG00000095339 | si:dkeyp-44a8.4
Description
si:dkeyp-44a8.4 [Source:ZFIN;Acc:ZDB-GENE-070705-543]
Coordinates
chr14:6340747-6344103:-
Coord C1 exon
chr14:6344050-6344103
Coord A exon
chr14:6343377-6343442
Coord C2 exon
chr14:6340747-6340818
Length
66 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCAACTCTCTACAGGTT
3' ss Score
10.91
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGAATGGATGGGCAGAAAGGAGAGAAAGGAGACTCTATACTAGAAGACAATCTG
Seq A exon
GTTCAGATGATTTCACAGCCTGGACCCGCAGGACCTCCAGGTCCACCAGGACCACCTGGATACATG
Seq C2 exon
GGCCTTCAGGGTCTTCAAGGACCACCAGGAACAACAGGATTAGTTGGCCTCCCTGGAACAAAAGGTGAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095339-'36-39,'36-35,37-39=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(21.1=66.7)
A:
PF0139113=Collagen=PU(18.3=77.3)
C2:
PF0139113=Collagen=FE(24.7=100),PF0139113=Collagen=PU(11.3=33.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAATGGATGGGCAGAAAGGA
R:
CACCTTTTGTTCCAGGGAGGC
Band lengths:
121-187
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]