MmuEX0012230 @ mm10
Exon Skipping
Gene
ENSMUSG00000063564 | Col23a1
Description
collagen, type XXIII, alpha 1 [Source:MGI Symbol;Acc:MGI:2653243]
Coordinates
chr11:51572068-51572784:+
Coord C1 exon
chr11:51572068-51572130
Coord A exon
chr11:51572456-51572512
Coord C2 exon
chr11:51572758-51572784
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCGTTTCAAACCCTCCCCAGGCC
3' ss Score
8.25
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTGCTGATGGTCCCAAGGGAGAAAAGGGAGAGTCGGCGTCTGACCATCTACAAGAGAGCCTG
Seq A exon
GCCCAGATCATAGTGGAACCAGGGCCCCCTGGTCCTCCTGGTCCCCCTGGCCCCATG
Seq C2 exon
GGCCTTCAGGGGATCCAAGGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000063564_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(23.3=66.7)
A:
PF0139113=Collagen=PU(21.0=68.4)
C2:
PF0139113=Collagen=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATGGTCCCAAGGGAGAA
R:
GGGACCTTGGATCCCCTGAAG
Band lengths:
84-141
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types