GgaEX1016555 @ galGal4
Exon Skipping
Gene
ENSGALG00000006708 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr13:13597857-13599322:+
Coord C1 exon
chr13:13597857-13597919
Coord A exon
chr13:13598612-13598653
Coord C2 exon
chr13:13599296-13599322
Length
42 bp
Sequences
Splice sites
3' ss Seq
CATTTAATTCCTTCATGCAGATC
3' ss Score
8.77
5' ss Seq
ATGGTAGGG
5' ss Score
5.88
Exon sequences
Seq C1 exon
GGAGCAGATGGGCCAAAAGGAGAGAAAGGAGACGCCGGATCACCGTGTTTGCAGAACAACCAC
Seq A exon
ATCATCCCGGAGCCAGGACCGCCCGGATTGCCCGGCCCCATG
Seq C2 exon
GGTCCTCCAGGAATCCAGGGGCCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006708-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(28.1=85.7)
A:
PF0139113=Collagen=PU(16.1=71.4)
C2:
PF0139113=Collagen=FE(12.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGATGGGCCAAAAGGAGAG
R:
TTTAGGCCCCTGGATTCCTGG
Band lengths:
87-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]