DreEX6085326 @ danRer10
Exon Skipping
Gene
ENSDARG00000089078 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr21:32063894-32064232:-
Coord C1 exon
chr21:32064179-32064232
Coord A exon
chr21:32064031-32064087
Coord C2 exon
chr21:32063894-32063920
Length
57 bp
Sequences
Splice sites
3' ss Seq
TCTTGATAACTGTCTTATAGGCC
3' ss Score
7.1
5' ss Seq
GCTGTAAGG
5' ss Score
4.86
Exon sequences
Seq C1 exon
GGGGCAGCAGGTCAAAAGGGAGAAAAAGGAGACTCTAGGCTCGAGGATAATCTA
Seq A exon
GCCCAGATTATCTCCTTGCCTGGCCCTCCAGGGCCTCCCGGACCCCCTGGGCCTGCT
Seq C2 exon
GGATATCATGGACTGCCTGGATCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089078-'10-11,'10-10,11-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(18.1=72.2)
A:
PF0139113=Collagen=PU(17.3=73.7)
C2:
PF0139113=Collagen=FE(12.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCAGGTCAAAAGGGAGAA
R:
TGGATCCAGGCAGTCCATGAT
Band lengths:
76-133
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]