BtaEX0009651 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013183 | COL23A1
Description
collagen, type XXIII, alpha 1 [Source:HGNC Symbol;Acc:HGNC:22990]
Coordinates
chr7:40682730-40683436:-
Coord C1 exon
chr7:40683374-40683436
Coord A exon
chr7:40683008-40683064
Coord C2 exon
chr7:40682730-40682756
Length
57 bp
Sequences
Splice sites
3' ss Seq
CCACCTCTGACCCTTCCTAGGCC
3' ss Score
8.52
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GGTGCCAACGGCCCCAAGGGAGAGAAGGGAGAGTCTGCATCTGACAAGCTACAGGAGAGCCTG
Seq A exon
GCCCAGATCATAGCAGAGCCAGGGCCCCCAGGCCCTCCTGGTCCCCCAGGCCCCATG
Seq C2 exon
GGCCTTCAGGGGATGCAGGGTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013183-'19-17,'19-16,21-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
PF0139113=Collagen=PD(24.6=71.4)
A:
PF0139113=Collagen=PU(22.2=73.7)
C2:
PF0139113=Collagen=FE(12.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAAGGGAGAGAAGGGAGAG
R:
GACCCTGCATCCCCTGAAGG
Band lengths:
73-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development