DreEX6059482 @ danRer10
Exon Skipping
Gene
ENSDARG00000063631 | ch1073-291c23.1
Description
ch1073-291c23.1 [Source:ZFIN;Acc:ZDB-GENE-050208-114]
Coordinates
chr13:241970-244040:-
Coord C1 exon
chr13:243907-244040
Coord A exon
chr13:242802-242879
Coord C2 exon
chr13:241970-242155
Length
78 bp
Sequences
Splice sites
3' ss Seq
AACTTGTTTTTTTGTGCCAGTTG
3' ss Score
7.35
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGGCGTGATCACCAACTCTGGAGGAAAGGTGATCGTGGCCAAAACAGCAGGACAGGCGATCTACAAGGGCAGCTTCGCCAACGGTGTGCGGTCTCTGTCTTTACCCACCTGGAGAGAGTCCTTCTCCGTCTCAG
Seq A exon
TTGGTAAACCAAAGAAAGGGGTGACCTATCCATCCACGCTGGTCTTCGTCACTTCAAGACCCTCCTCAGGTAAAACAG
Seq C2 exon
GAGAGTCCAAAGATCTGCCGTACACTACTGCATCGCTAGTGACAGAGGCTGCAGAGGCGGAGCCAAGCACCACTACAACCCCGCCCACCACCACCACCACCACTACCACCACCCCGCCGACCACGACCACACCCACCACAACATCAGCCAAACCACGGGCCACCGTTCATAGAGTCCGCGAGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063631-'2-5,'2-3,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.213 C2=1.000
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(45.6=89.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGGTGATCGTGGCCAAA
R:
CCTCTGCAGCCTCTGTCACTA
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]