RnoEX0098040 @ rn6
Exon Skipping
Gene
ENSRNOG00000004706 | Vit
Description
vitrin [Source:RGD Symbol;Acc:1564128]
Coordinates
chr6:1153740-1166041:+
Coord C1 exon
chr6:1153740-1153873
Coord A exon
chr6:1158184-1158261
Coord C2 exon
chr6:1165856-1166041
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTCTTTTGCAGAGA
3' ss Score
12.85
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CGGTGTGCTGGATGATTCAGGAGGGAAGATACTTGTTCGGAAAGTTGCTGGGCAGTCCTTTTACAAAGGAAGCTACTCGAACGGAGTTCAGTCTTTATCCTTACCCAGGTGGAGAGAGTCCTTTGTCGTCTCAG
Seq A exon
AGAGTAAGCCCCAAAAGGGAGTAACCTATCCATCAACTCTTACATATTCATCACCCAAAACTGCAGCGGCTAACGCAG
Seq C2 exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTCTTCCAGGGACAACCGCACAGCCTGTCACCCTGTCACAGGCTCTAGCTACCCCAGTAGCTGAAGCTACCCACAGAGCCACCTCAAAGCCATTTGCAGCATCTGTCACAAGCAGCTCCCGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004706-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.310 C2=0.937
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(45.6=89.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAGTTGCTGGGCAGTCCTT
R:
GGGTAGCTAGAGCCTGTGACA
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]