MmuEX0051368 @ mm9
Exon Skipping
Gene
ENSMUSG00000024076 | Vit
Description
vitrin [Source:MGI Symbol;Acc:MGI:1921449]
Coordinates
chr17:78973425-78986183:+
Coord C1 exon
chr17:78973425-78973558
Coord A exon
chr17:78978694-78978771
Coord C2 exon
chr17:78985998-78986183
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTCTTTTGCAGAAA
3' ss Score
13.24
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
CGGTGTGCTGGATAATTCAGGAGGGAAAATACTTGTTCGGAAAGTTGCTGGGCAGTCTGGTTACAAAGGAAGCTACTCGAATGGGGTTCAGTCTTTATCTTTACCCAGATGGCGAGAGTCCTTCATCGTCGCAG
Seq A exon
AAAGTAAGCCCCAAAAGGGTGTAGCCTACCCATCGACTCTTACATATTCATCATCGAAAACTGCAGCTGCTAAAGCAG
Seq C2 exon
GTGAGACCACAAAAGCCTATGAGAAGCCATCTATTCCAGGGACAACCATACAGCCTGTCACCCTGACACAGGCTCAAGCTACCCCTGTAGCTGAGGTCACCCACAGATCCACCTCAAAGCCATTTGCAGCATCTGTCACCAACAGCCCCAGACCCCAACCTGTGGGCCACAGGAGTCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024076_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.296 C2=1.000
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(45.1=89.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGGCAGTCTGGTTACAAA
R:
CTACAGGGGTAGCTTGAGCCT
Band lengths:
178-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: