GgaEX6029862 @ galGal4
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
vitrin precursor [Source:RefSeq peptide;Acc:NP_001019751]
Coordinates
chr3:31517293-31522674:-
Coord C1 exon
chr3:31522541-31522674
Coord A exon
chr3:31518967-31519044
Coord C2 exon
chr3:31517293-31517373
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCAATGATTTTTATTTGTAGAGG
3' ss Score
5.24
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGGTGCAATAGACAATACGGGTGGGAAGATCCTTGTTCAGAAGGTGGCTGGCCATGCTGGGTACCGGGGGAGCTTCTCCAATGGAGTTCGGTCATTGTCATTGCCACGCTGGAGGGAGTCCTTCCTTGTCTCAG
Seq A exon
AGGGCAAGCCAAGAAAGGGTGTGACATATCCATCAACTCTTGAATTCGCTTCCTCAAAGAGCACAGCTGTTAAACCAG
Seq C2 exon
AGCCTAAGAAGCCAGAGCAAGACCTAAAAGTTACAAAGAGTGCAGCCACATCTGATACATCAGGGAAAGCCTGGGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583-'5-8,'5-6,6-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=0.630 C2=1.000
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(36.9=89.1)
A:
PF115933=Med3=PU(2.7=33.3)
C2:
PF115933=Med3=FE(8.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGGTGGGAAGATCCTTGTTC
R:
AGATGTGGCTGCACTCTTTGT
Band lengths:
170-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]