HsaEX6012914 @ hg19
Exon Skipping
Gene
ENSG00000205221 | VIT
Description
vitrin [Source:HGNC Symbol;Acc:12697]
Coordinates
chr2:36982064-36994428:+
Coord C1 exon
chr2:36982064-36982197
Coord A exon
chr2:36986112-36986189
Coord C2 exon
chr2:36994237-36994428
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTCTTTTTTGCAGAAA
3' ss Score
12.24
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGGTGTGCTTGATAATTCAGGAGGGAAAATACTTGTTCGGAAGGTTGCTGGACAGTCTGGTTACAAAGGGAGTTATTCCAACGGTGTCCAATCGTTATCCCTACCACGATGGAGAGAATCCTTTATCGTCTTAG
Seq A exon
AAAGTAAACCCAAAAAGGGTGTAACCTACCCATCAGCTCTTACATACTCATCATCGAAAAGTCCAGCTGCCCAAGCAG
Seq C2 exon
GTGAGACCACAAAAGCCTATCAGAGGCCACCTATTCCAGGGACAACTGCACAGCCGGTCACTCTGATGCAGCTTCTGGCTGTCACTGTAGCTGTGGCCACCCCCACCACCTTGCCAAGGCCATCCCCTTCTGCTGCTTCTACCACCAGCATCCCCAGACCACAATCAGTGGGCCACAGGAGCCAGGAGATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000205221-'7-7,'7-6,8-7=AN
Average complexity
A_S
Mappability confidence:
88%=100=75%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.307 C2=0.738
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(44.1=89.1)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTTCGGAAGGTTGCTGGAC
R:
GAAGCTGCATCAGAGTGACCG
Band lengths:
177-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)