GgaEX6029862 @ galGal3
Exon Skipping
Gene
ENSGALG00000010583 | VIT
Description
NA
Coordinates
chr3:33412568-33419496:-
Coord C1 exon
chr3:33419363-33419496
Coord A exon
chr3:33415789-33415866
Coord C2 exon
chr3:33412568-33412774
Length
78 bp
Sequences
Splice sites
3' ss Seq
GCAATGATTTTTATTTGTAGAGG
3' ss Score
5.24
5' ss Seq
CAGGCAAGT
5' ss Score
3.1
Exon sequences
Seq C1 exon
TGGTGCAATAGACAATACGGGTGGGAAGATCCTTGTTCAGAAGGTGGCTGGCCATGCTGGGTACCGGGGGAGCTTCTCCAATGGAGTTCGGTCATTGTCATTGCCACGCTGGAGGGAGTCCTTCCTTGTCTCAG
Seq A exon
AGGGCAAGCCAAGAAAGGGTGTGACATATCCATCAACTCTTGAATTCGCTTCCTCAAAGAGCACAGCTGTTAAACCAG
Seq C2 exon
GGGACACTGTCCGCAAGGTGTATCAGACATCACCTGTACCAATGCCAACCACACAAATGGCAGCCACAACACCAACCCCAACAACCACAACCACAGATCCTTTCAGCACAACACCAAAGCCAACCACAACACCTGCAACAACAAGAACCACAACAGACTCAGCTGCAGCCAAGCCTCGACCTGGACTGCAGAGGGTCAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010583-'5-6,'5-4,6-6=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=0.444 C2=1.000
Domain overlap (PFAM):
C1:
PF0381514=LCCL=PD(36.9=89.1)
A:
PF115933=Med3=PU(8.3=88.9)
C2:
PF115933=Med3=FE(23.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGTTCAGAAGGTGGCTGG
R:
GTTGTGGCTGCCATTTGTGTG
Band lengths:
174-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]