DreEX6064877 @ danRer10
Exon Skipping
Gene
ENSDARG00000011909 | itpr2
Description
inositol 1,4,5-trisphosphate receptor, type 2 [Source:ZFIN;Acc:ZDB-GENE-050419-192]
Coordinates
chr18:15980651-15988455:+
Coord C1 exon
chr18:15980651-15980721
Coord A exon
chr18:15988132-15988247
Coord C2 exon
chr18:15988369-15988455
Length
116 bp
Sequences
Splice sites
3' ss Seq
TAGGTCTCTCTGTTTTCTAGATT
3' ss Score
7.94
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GTTGGTGGATGATAGATGTGTAGTGCAACCTGAGACTGGGGATCTTACAAACCCACCGAAGAAATTCAGAG
Seq A exon
ATTGTCTCTTCAAAGTGTGTCCTATGAATCGATACTCTGCACAGAGACAGTTCTGGAAGGCCAAACAGGGCAAGCATGGGAACAACACACAGGCTGATCTCTTCAAGAAATTACAG
Seq C2 exon
CATGCAGCAGAACTGGAGCAGAAACAAAATGATTCAGAGAACAAGAAACTGCTGGGTGAGGTTGTCAAATACAGTCGGGTTATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011909-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.080 A=0.051 C2=0.138
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGATGATAGATGTGTAGTGC
R:
GTATAACCCGACTGTATTTGACAACC
Band lengths:
154-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]