MmuEX0024742 @ mm10
Exon Skipping
Gene
ENSMUSG00000030287 | Itpr2
Description
inositol 1,4,5-triphosphate receptor 2 [Source:MGI Symbol;Acc:MGI:99418]
Coordinates
chr6:146405758-146476757:-
Coord C1 exon
chr6:146476687-146476757
Coord A exon
chr6:146426455-146426570
Coord C2 exon
chr6:146405758-146405802
Length
116 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTGATATTTCCCCAGACT
3' ss Score
8.99
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTTGGTGGATGACCGTTGTGTGGTGCACCCAGAGGCGGGAGACCTTGCCAACCCACCCAAGAAGTTCAGAG
Seq A exon
ACTGCCTGTTCAAGGTGTGCCCTATGAATCGATACTCTGCCCAGAAGCAATACTGGAAAGCCAAGCAGGCGAAACAGGGGAACCATACAGAGGCTGCCCTGCTGAAGAAGCTCCAG
Seq C2 exon
CTTAATCCTGACTATCGAGATGCTCAAAATGAAGGAAAAAATGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030287_MULTIEX2-2/9=1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.007 C2=0.600
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=PD(26.3=25.0)
C2:
PF0281514=MIR=FE(7.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGATGACCGTTGTGTGGTG
R:
TTTTCCTTCATTTTGAGCATCTCGA
Band lengths:
106-222
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types