DreEX6023200 @ danRer10
Exon Skipping
Gene
ENSDARG00000014655 | itpr1a
Description
inositol 1,4,5-trisphosphate receptor, type 1a [Source:ZFIN;Acc:ZDB-GENE-070604-3]
Coordinates
chr6:39935557-39941670:+
Coord C1 exon
chr6:39935557-39935627
Coord A exon
chr6:39939738-39939853
Coord C2 exon
chr6:39941584-39941670
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCCTCTTTCTCTCTCTGTAGACT
3' ss Score
13.08
5' ss Seq
CATGTGAGT
5' ss Score
7.83
Exon sequences
Seq C1 exon
GTTGGTTGATGACCGATGTGTTGTTCAACCAGATGCCGGAGACCTGAATAACCCACCTAAAAAGTTTCGGG
Seq A exon
ACTGTCTGTTCAGACTGTGTCCCATGAACAGATATTCGGCACAGAAACAGTTCTGGAAAGCTGCCAAACCTGGAGGAACTAGCACCACAGATACTGTCCTGCTTAACAAACTCCAT
Seq C2 exon
CATGCTGCTGATTTAGAGAAGAAACAAAATGATTCTGAGAACAAAAAGCTGCTTGGAACCGTCATTCAGTATGGCAATGTCATCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000014655-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.103
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(10.6=100)
A:
PF087096=Ins145_P3_rec=FE(16.8=100)
C2:
PF087096=Ins145_P3_rec=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGATGACCGATGTGTTGT
R:
CTGGATGACATTGCCATACTGA
Band lengths:
155-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]